Capsids, the containers housing viral DNA, are stable, self-assembling structures because they rely on the net strength afforded by a combination of weak attractive or repulsive forces arising from the relative position of proteins making up the container

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Viruses are essentially mobile DNA containers that implicate themselves into living cells by usurping the cell’s reproductive machinery to reproduce their own DNA. Viral DNA is housed in protective nano-scale containers, called capsids, that self-assemble within the host cell. These resilient proteinaceous packets self-assemble in response to a variety of weak forces that, in concert, provide the capsid with a great deal of stability. The weak forces at work include attraction or repulsion between electrostatic charges, water solubility, and constituent amino acid structures in various parts of the capsid.

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“Viruses are nanosized, genome-filled protein containers with remarkable thermodynamic and mechanical properties. They form by spontaneous self-assembly inside the crowded, heterogeneous cytoplasm of infected cells. Self-assembly of viruses seems to obey the principles of thermodynamically reversible self-assembly but assembled shells (‘capsids’) strongly resist disassembly. Following assembly, some viral shells pass through a sequence of coordinated maturation steps that progressively strengthen the capsid. Viral shells have effective Young’s moduli ranging from that of polyethylene to that of plexiglas. Some of them can withstand internal osmotic pressures that are tens of atmospheres.” (Roos et al. 2010:733)

“Viruses do not carry out metabolic activity and rely entirely on host-cell molecular machinery for reproduction. This absence of metabolic and reproductive activity suggests that, unlike cells, the assembly of viruses could perhaps be understood on the basis of equilibrium thermodynamics…Capsid proteins, or ‘subunits’, interact mainly through a combination of electrostatic repulsion, hydrophobic attraction and specific contacts between certain pairs of amino acids (known as ‘Caspar pairs’)…Self-assembly of most infectious sphere-like ssRNA viruses under ambient conditions requires the presence of the viral RNA genome molecules. Viral RNA molecules act in part as a non-specific ‘electrostatic glue’ that links together the oppositely charged capsid proteins, and particular ‘stem-loop’ side branches of the RNA molecules have specific affinity for the capsid proteins…On the other hand, self-assembly of viral shells of most ds genomes, such as the tailed dsDNA ‘bacteriophage’ viruses (that is, viruses that prey on bacteria), does not require the presence of genome molecules. The much larger bending rigidity of dsDNA molecules presumably prevents them from acting as ‘electrostatic glue’. In these cases, the genome is usually inserted, after capsid assembly has been completed, by the action of a rotary molecular motor imbedded in the capsid.” (Roos et al. 2010:733-734)

Journal article
Physical virologyNat PhysOctober 1, 2010
W. H. Roos, R. Bruinsma, G. J. L. Wuite

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